USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: RBPMS_HUMAN USC-OGP 2-DE database:  RBPMS_HUMAN RBPMS_HUMAN General information about the entry View entry in simple text format Entry name RBPMS_HUMAN Primary accession number Q93062 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=RNA-binding protein with multiple splicing; Short=RBP-MS; AltName: Full=Heart and RRM expressed sequence; Short=Hermes;. Gene name Name=RBPMS Synonyms=HERMES Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1256: pI=5.39; Mw=30456 Cross-references UniProtKB/Swiss-Prot Q93062; RBPMS_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name RBPMS_HUMAN Primary accession number Q93062 Secondary accession number(s) D3DSU9 Q92516 Q92517 Q92518 Q96J26 Sequence was last modified on  February 1, 1997 (version 1) Annotations were last modified on  March 15, 2017 (version 159) Name and origin of the protein Description RecName: Full=RNA-binding protein with multiple splicing; Short=RBP-MS; AltName: Full=Heart and RRM expressed sequence; Short=Hermes; Gene name Name=RBPMS Synonyms=HERMES Encoded on Name=RBPMS; Synonyms=HERMES Keywords 3D-structure; Acetylation; Activator; Alternative splicing; Complete proteome; Cytoplasm; Nucleus; Phosphoprotein; Reference proteome; RNA-binding; Transcription; Transcription regulation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL D84110; BAA12228.1; -; mRNA EMBL D84107; BAA12225.1; -; mRNA EMBL D84108; BAA12226.1; -; mRNA EMBL D84109; BAA12227.1; -; mRNA EMBL D84111; BAA12229.1; -; mRNA EMBL CH471080; EAW63451.1; -; Genomic_DNA EMBL CH471080; EAW63453.1; -; Genomic_DNA EMBL BC003608; AAH03608.1; -; mRNA CCDS CCDS34875.1; -. [Q93062-2]; . CCDS CCDS34876.1; -. [Q93062-3]; . CCDS CCDS6077.1; -. [Q93062-1]; . PIR JC6127; JC6127; . RefSeq NP_001008710.1; NM_001008710.2. [Q93062-1]; . RefSeq NP_001008711.1; NM_001008711.2. [Q93062-2]; . RefSeq NP_001008712.1; NM_001008712.2. [Q93062-3]; . RefSeq NP_006858.1; NM_006867.3. [Q93062-1]; . RefSeq XP_016868475.1; XM_017012986.1. [Q93062-1]; . UniGene Hs.334587; -; . PDB 1BNY; Model; -; A=15-111 PDB 5CYJ; X-ray; 1.79 A; A/B=14-111 PDB 5DET; X-ray; 1.95 A; A/B=14-111 PDBsum 1BNY; -; . PDBsum 5CYJ; -; . PDBsum 5DET; -; . ProteinModelPortal Q93062; -; . SMR Q93062; -; . BioGrid 116220; 192; . IntAct Q93062; 258; . MINT MINT-1434067; -; . STRING 9606.ENSP00000340176; -; . iPTMnet Q93062; -; . PhosphoSitePlus Q93062; -; . DMDM 13124469; -; . MaxQB Q93062; -; . PaxDb Q93062; -; . PeptideAtlas Q93062; -; . PRIDE Q93062; -; . Ensembl ENST00000287771; ENSP00000287771; ENSG00000157110. [Q93062-2]; . Ensembl ENST00000320203; ENSP00000318102; ENSG00000157110. [Q93062-1]; . Ensembl ENST00000339877; ENSP00000340176; ENSG00000157110. [Q93062-3]; . Ensembl ENST00000397323; ENSP00000380486; ENSG00000157110. [Q93062-1]; . GeneID 11030; -; . KEGG hsa:11030; -; . UCSC uc003xib.5; human. [Q93062-1]; . CTD 11030; -; . DisGeNET 11030; -; . GeneCards RBPMS; -; . HGNC HGNC:19097; RBPMS; . HPA HPA056999; -; . MIM 601558; gene; . neXtProt NX_Q93062; -; . OpenTargets ENSG00000157110; -; . PharmGKB PA134985584; -; . eggNOG KOG1457; Eukaryota; . eggNOG ENOG410XSBT; LUCA; . GeneTree ENSGT00500000044861; -; . HOGENOM HOG000017369; -; . HOVERGEN HBG069897; -; . InParanoid Q93062; -; . OMA FITREPY; -; . PhylomeDB Q93062; -; . TreeFam TF351070; -; . ChiTaRS RBPMS; human; . GeneWiki RBPMS; -; . GenomeRNAi 11030; -; . PRO PR:Q93062; -; . Proteomes UP000005640; Chromosome 8; . Bgee ENSG00000157110; -; . CleanEx HS_RBPMS; -; . ExpressionAtlas Q93062; baseline and differential; . Genevisible Q93062; HS; . GO GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB; . GO GO:0005829; C:cytosol; IDA:HPA; . GO GO:0005654; C:nucleoplasm; IDA:HPA; . GO GO:0000932; C:P-body; IEA:UniProtKB-SubCell; . GO GO:0005685; C:U1 snRNP; IBA:GO_Central; . GO GO:0000166; F:nucleotide binding; IEA:InterPro; . GO GO:0008143; F:poly(A) binding; IDA:UniProtKB; . GO GO:0042803; F:protein homodimerization activity; IPI:UniProtKB; . GO GO:0003723; F:RNA binding; IDA:UniProtKB; . GO GO:0035614; F:snRNA stem-loop binding; IBA:GO_Central; . GO GO:0003713; F:transcription coactivator activity; IDA:UniProtKB; . GO GO:0030619; F:U1 snRNA binding; IBA:GO_Central; . GO GO:0000398; P:mRNA splicing; via spliceosome; IBA:GO_Central GO GO:0010862; P:positive regulation of pathway-restricted SMAD protein phosphorylation; IDA:UniProtKB; . GO GO:0060391; P:positive regulation of SMAD protein import into nucleus; IDA:UniProtKB; . GO GO:0006355; P:regulation of transcription; DNA-templated; IEA:UniProtKB-KW GO GO:0006979; P:response to oxidative stress; IMP:UniProtKB; . GO GO:0006396; P:RNA processing; TAS:ProtInc; . GO GO:0006351; P:transcription; DNA-templated; IEA:UniProtKB-KW Gene3D 3.30.70.330; -; 1; . InterPro IPR012677; Nucleotide-bd_a/b_plait; . InterPro IPR000504; RRM_dom; . Pfam PF00076; RRM_1; 1; . SMART SM00360; RRM; 1; . SUPFAM SSF54928; SSF54928; 1; . PROSITE PS50102; RRM; 1; .

Gateways to other related servers

• The World-2DPAGE Constellation - Entry point to the world-wide 2-DPAGE resources.
• World-2DPAGE Repository - A public repository for gel-based proteomics data linked to protein identification published in the literature.
• World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
• SWISS-2DPAGE - The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
• ExPASy - The resources web server of the Swiss Institute of Bioinformatics

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